Mir-196-P3

MirGeneDB ID

Ocu-Mir-196-P3

Family name

MIR-196 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-196a-1

Paralogues

Ocu-Mir-196-P1 Ocu-Mir-196-P4

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cja-Mir-196-P3 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Eca-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(oryCun2_add)

chr19: 38730720-38730779 [+] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

UGGAGCUGGAACUGGAACUGCUGGGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGUCUCUGAACACAACGACAUGGAACCACCUGACUCACGGCAGUUACUGCUCCUCGCUUAGCUG

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Structure

        10            20        30        40        50         
UGGAGCUGGAACUGGAA----|    GG    A      A              GGCCUGGG 
                     CUGCU  GUGA UUAGGU GUUUCAUGUUGUUG        U
                     GACGG  CACU AGUCCA CAAGGUACAGCAAC        C
GUCGAUUCGCUCCUCGUCAUU^    --    C      C              ACAAGUCU 
.       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-196-P3_5p

mirBase accession

MIMAT0048311

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Ocu-Mir-196-P3_3p*

mirBase accession

MIMAT0048312

Sequence

38- CAACGACAUGGAACCACCUGAC -60

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