MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-196-P3

Family name MIR-196 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-196-P1  Cmi-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635976.1: 1249990-1250047 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-196-P3)		 Mir-196-P3 KI635976.1: 1249990-1250047 [+] UCSC Ensembl
Mir-10-P1c-v1 KI635976.1: 1292315-1292377 [+] UCSC Ensembl
Mir-10-P1c-v2 KI635976.1: 1292316-1292376 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
GCGCAAGUGAAAUGCAACUGUUGUGUGAUUUAGGUAGUUUCCUGUUGUUGGGCUGCUCUUUGUUCACAGUGACAAGAAACUGCCUGUAUUACUCCAGUUAUUUUCAUCGCAAACUUGU
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Structure
        10            20        30        40        50         
GCGCAAGUGAAAUGCAA----|  UUGU     U           C   UG   -  CUGCU 
                     CUG    GUGAU UAGGUAGUUUC UGU  UUG GG     \
                     GAC    CAUUA GUCCGUCAAAG ACA  GAC CU     C
UGUUCAAACGCUACUUUUAUU^  CU--     U           A   GU   A  UGUUU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-196-P3_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCCUGUUGUUGGG -22
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Star sequence

Cmi-Mir-196-P3_3p*
mirBase accessionNone
Sequence 
36- CAGUGACAAGAAACUGCCUGUA -58
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