Mir-196-P3

MirGeneDB ID

Aca-Mir-196-P3

Family name

MIR-196 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-196c

Paralogues

Aca-Mir-196-P1 Aca-Mir-196-P4

Orthologues

Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cja-Mir-196-P3 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Eca-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Ocu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(anoCar2)

6: 75666553-75666613 [-] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CCAGAAAUGACCUAGAACUGUUCUGUGGAUUAGGUAGUUUCACGUUGUUGGGAAUUCAUUUUUAACACACAAGAACAUAAAACUACCUGAUUUACUCCAGUUUAUUCGCCUCGACGUUUUA

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Structure

        10            20        30        40        50          
CCAGAAAUGACCUAGAA----|  UUCU                CAC   G   GGAAUUCAU 
                     CUG    GUGGAUUAGGUAGUUU   GUU UUG         \
                     GAC    CAUUUAGUCCAUCAAA   CAA AAC         U
AUUUUGCAGCUCCGCUUAUUU^  CU--                AUA   G   ACACAAUUU 
 .       110       100          90        80        70

Deep sequencing

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Comment

The Dicer cut is +1 relative to most other vertebrates examined.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-196-P3_5p

mirBase accession

MIMAT0021832

Sequence

0- UAGGUAGUUUCACGUUGUUGGGA -23

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Star sequence

Aca-Mir-196-P3_3p*

mirBase accession

MIMAT0021833

Sequence

38- ACAAGAACAUAAAACUACCUGAU -61

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