MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-196-P3a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mal-Mir-196-P4a 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Ocu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884780.1: 181712-181773 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCUGAUUUCAUUCUGGAGUUGUGUGAUGUAGGUAGUUUCAAGUUGUUGGGCUGGAUUGUUAAGAUCACAGGAACCUGAAACUGCCUGAAUCACACCACCUAAAUGCCAACAAACAGCGGA
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Structure
        10           20        30        40        50          
GUGCUGAUUUCAUUCUGGA---| U       G            A   G   GGCUGGAUU 
                      GU GUGUGAU UAGGUAGUUUCA GUU UUG         \
                      CA CACACUA GUCCGUCAAAGU CAA GAC         G
AGGCGACAAACAACCGUAAAUC^ C       A            C   G   ACUAGAAUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-196-P3a_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAAGUUGUUGGGC -23
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Star sequence

Mal-Mir-196-P3a_3p*
mirBase accessionNone
Sequence 
40- AGGAACCUGAAACUGCCUGAAU -62
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