MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-196-P3

Family name MIR-196 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-196a-1
Paralogues Mmu-Mir-196-P1  Mmu-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(mm10)		 chr11: 96265187-96265246 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
GGCAGCUUGAGCCGGGACUGUUGAGUGAAGUAGGUAGUUUCAUGUUGUUGGGCCUGGCUUUCUGAACACAACGACAUCAAACCACCUGAUUCAUGGCAGUUACUGCUUCUUGCUUAGCUG
Get precursor sequence
Structure
        10            20        30        40        50         
GGCAGCUUGAGCCGGGA----|    GA     G     A    C         GGCCUGGC 
                     CUGUU  GUGAA UAGGU GUUU AUGUUGUUG        U
                     GACGG  UACUU GUCCA CAAA UACAGCAAC        U
GUCGAUUCGUUCUUCGUCAUU^    --     A     C    C         ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-196-P3_5p
mirBase accessionMIMAT0000518
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
Proposed targets microrna.org: MIMAT0000518
TargetScanVert: mmu-miR-196a-5p
miRDB: MIMAT0000518
Star sequence

Mmu-Mir-196-P3_3p*
mirBase accessionMIMAT0017013
Sequence 
38- CAACGACAUCAAACCACCUGAU -60
Get sequence
Proposed targets TargetScanVert: mmu-miR-196a-1-3p
miRDB: MIMAT0017013