MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-196-P4

Family name MIR-196 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-196a-2
Paralogues Mmu-Mir-196-P1  Mmu-Mir-196-P3 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4d-v1  Xtr-Mir-196-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(mm10)		 chr15: 102973365-102973423 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-196-P4)		 Mir-196-P4 chr15: 102973365-102973423 [+] UCSC Ensembl
Mir-615 chr15: 103014926-103014989 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
CGGCCCUGCUUGCUCAGCUGAUCUGUGGCUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUUUCGUCGAGGGCCCC
Get precursor sequence
Structure
        10            20        30        40        50         
CGGCCCUGCUUGCUCAG----|   UC                  A          AUUGAG 
                     CUGA  UGUGGCUUAGGUAGUUUC UGUUGUUGGG      \
                     GACU  ACAUUGAGUCCGUCAAAG ACAACGGCUC      U
CCCCGGGAGCUGCUUUUGGCU^   --                  A          AAGUUU 
       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-196-P4_5p
mirBase accessionMIMAT0000518
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000518
TargetScanVert: mmu-miR-196a-5p
miRDB: MIMAT0000518
Star sequence

Mmu-Mir-196-P4_3p*
mirBase accessionMIMAT0004618
Sequence 
36- UCGGCAACAAGAAACUGCCUGAG -59
Get sequence
Proposed targets microrna.org: MIMAT0004618
TargetScanVert: mmu-miR-196a-2-3p
miRDB: MIMAT0004618