Mir-196-P4

MirGeneDB ID

Cfa-Mir-196-P4

Family name

MIR-196 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-196a-2

Paralogues

Cfa-Mir-196-P1 Cfa-Mir-196-P3

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4d-v1 Xtr-Mir-196-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chr27: 1270718-1270776 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-196-P4)

Mir-615 chr27: 1230453-1230515 [-] UCSC Ensembl
Mir-196-P4 chr27: 1270718-1270776 [-] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CCGCCCUGCUCGCUCAGCUGAUCUGUGGCUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUUUCGUCGAGGGCCCC

Get precursor sequence

Structure

        10            20        30        40        50         
CCGCCCUGCUCGCUCAG----|   UC                  A          AUUGAG 
                     CUGA  UGUGGCUUAGGUAGUUUC UGUUGUUGGG      \
                     GACU  ACAUUGAGUCCGUCAAAG ACAACGGCUC      U
CCCCGGGAGCUGCUUUUGGCU^   --                  A          AAGUUU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-196-P4_5p

mirBase accession

MIMAT0006662

Sequence

0- UAGGUAGUUUCAUGUUGUUGGGA -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-196a
miRDB: MIMAT0006662

Star sequence

Cfa-Mir-196-P4_3p*

mirBase accession

None

Sequence

36- UCGGCAACAAGAAACUGCCUGAG -59

Get sequence