MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-196-P4

Family name MIR-196 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-196a
Paralogues Xtr-Mir-196-P1 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4d-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(xenTro9_add)		 chr2: 142905384-142905444 [-] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
UGCAUCUUUGUAUCCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGCUUUUUCUUAACGCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUCGUCUUCAUCAAGUGCAAC
Get precursor sequence
Structure
        10            20        30        40        50          
UGCAUCUUUGUAUCCAG----|    CU      U          A        GGAUUGCUU 
                     CUGAU  GUGGUU AGGUAGUUUC UGUUGUUG         \
                     GACUG  CAUUAA UCCGUCAAAG ACAACGGC         U
CAACGUGAACUACUUCUGCUU^    --      U          A        GCAAUUCUU 
 .       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-196-P4_5p
mirBase accessionMIMAT0003690
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
Proposed targets TargetScanVert: xtr-miR-196a
Star sequence

Xtr-Mir-196-P4_3p*
mirBase accessionNone
Sequence 
39- CGGCAACAAGAAACUGCCUUAA -61
Get sequence