Mir-196-P4

MirGeneDB ID

Xtr-Mir-196-P4

Family name

MIR-196 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-196a

Paralogues

Xtr-Mir-196-P1

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4d-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(xenTro9_add)

chr2: 142905384-142905444 [-] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

UGCAUCUUUGUAUCCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGCUUUUUCUUAACGCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUCGUCUUCAUCAAGUGCAAC

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Structure

        10            20        30        40        50          
UGCAUCUUUGUAUCCAG----|    CU      U          A        GGAUUGCUU 
                     CUGAU  GUGGUU AGGUAGUUUC UGUUGUUG         \
                     GACUG  CAUUAA UCCGUCAAAG ACAACGGC         U
CAACGUGAACUACUUCUGCUU^    --      U          A        GCAAUUCUU 
 .       110       100          90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-196-P4_5p

mirBase accession

MIMAT0003690

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-196a

Star sequence

Xtr-Mir-196-P4_3p*

mirBase accession

None

Sequence

39- CGGCAACAAGAAACUGCCUUAA -61

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