Mir-196-P4

MirGeneDB ID

Rno-Mir-196-P4

Family name

MIR-196 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-196a

Paralogues

Rno-Mir-196-P1c Rno-Mir-196-P1d Rno-Mir-196-P3

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4d-v1 Xtr-Mir-196-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

chr7: 144584259-144584317 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-196-P4)

Mir-196-P4 chr7: 144584259-144584317 [+] UCSC Ensembl
Mir-615 chr7: 144629035-144629098 [+] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CGGCCCUGUUUGCUCAGCUGAUCUGUGGCUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUUUCGUCGAGGGCCCC

Get precursor sequence

Structure

        10            20        30        40        50         
CGGCCCUGUUUGCUCAG----|   UC                  A          AUUGAG 
                     CUGA  UGUGGCUUAGGUAGUUUC UGUUGUUGGG      \
                     GACU  ACAUUGAGUCCGUCAAAG ACAACGGCUC      U
CCCCGGGAGCUGCUUUUGGCU^   --                  A          AAGUUU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-196-P4_5p

mirBase accession

MIMAT0000871

Sequence

0- UAGGUAGUUUCAUGUUGUUGGGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000871
TargetScanVert: rno-miR-196a-5p
miRDB: MIMAT0000871

Star sequence

Rno-Mir-196-P4_3p*

mirBase accession

MIMAT0004737

Sequence

36- UCGGCAACAAGAAACUGCCUGAG -59

Get sequence

Proposed targets

microrna.org: MIMAT0004737
TargetScanVert: rno-miR-196a-3p
miRDB: MIMAT0004737