MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-196-P1d

Family name MIR-196 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-196b-2
Paralogues Rno-Mir-196-P1c  Rno-Mir-196-P3  Rno-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Xtr-Mir-196-P1 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Olfactores
Genome context
(rn6)		 chr4: 82199068-82199125 [-] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
GCGAGGCAGCAUCUGAACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCACCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUGAAAGCGUCUCCAGGUACC
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Structure
        10            20        30        40        50        
GCGAGGCAGCAUCUGAA----|   UC      UU       U  C           UCCA 
                     CUGG  GGUGAU  AGGUAGU UC UGUUGUUGGGA    C
                     GACU  UCAUUA  UCCGUCA AG ACGACAGCUCU    C
CCAUGGACCUCUGCGAAAGUU^   --      CU       C  C           CUUU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-196-P1d_5p
mirBase accessionMIMAT0001082
Sequence 
0- UAGGUAGUUUCCUGUUGUUGGGA -23
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Star sequence

Rno-Mir-196-P1d_3p*
mirBase accessionMIMAT0017171
Sequence 
35- UCGACAGCACGACACUGCCUUCA -58
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