Mir-196-P1

MirGeneDB ID

Ami-Mir-196-P1

Family name

MIR-196 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-196-3

Paralogues

Ami-Mir-196-P3 Ami-Mir-196-P4

Orthologues

Aca-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017712875.1: 24902813-24902871 [-] UCSC

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

GCUCAGAGCGCCGAGAACUGCUGUGUGGUUUAGGUAGUUUCAUGUUGUUGGGGCUCCACCUUUCUCUCUACAGCACGAAACUGCCUUAAUUACUUCAGUUGAAAUCGUCACCAGGUAUG

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Structure

        10         20         30        40        50         
GCUCAGAGCGCCGAGAACU-    U-|     U          A      U    CUCCA 
                    GCUG  GUGGUU AGGUAGUUUC UGUUGU GGGG     \
                    UGAC  CAUUAA UCCGUCAAAG ACGACA CUCU     C
GUAUGGACCACUGCUAAAGU    UU^     U          C      U    CUUUC 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-196-P1_5p

mirBase accession

MIMAT0038215

Sequence

0- UAGGUAGUUUCAUGUUGUUGGGG -23

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Star sequence

Ami-Mir-196-P1_3p* (predicted)

mirBase accession

None

Sequence

36- UCUACAGCACGAAACUGCCUUAA -59

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