Mir-196-P1a

MirGeneDB ID

Gmo-Mir-196-P1a

Family name

MIR-196 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-196a

Paralogues

Gmo-Mir-196-P1b Gmo-Mir-196-P4a

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Xtr-Mir-196-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1730: 83617-83675 [-] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

ACUUAAAGCUGGAUCGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUCUGUCUUCUUACUCUGCAACACGAAACUGUCUUAAUUGCCUCAGUUACAAACAUCGAGUCCUCGG

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Structure

        10            20        30        40        50         
ACUUAAAGCUGGAUCGA----|  UCGA UG   U  GU      A      U   AUCUGU 
                     CUG    G  GUU AG  AGUUUC UGUUGU GGG      \
                     GAC    C  UAA UC  UCAAAG ACAACG CUC      C
GGCUCCUGAGCUACAAACAUU^  UC-- GU   U  UG      C      U   AUUCUU 
       110       100          90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on the 3p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-196-P1a_5p

mirBase accession

MIMAT0044146

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Gmo-Mir-196-P1a_3p*

mirBase accession

None

Sequence

37- CUGCAACACGAAACUGUCUUAA -59

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