MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-196-P1a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-196a
Paralogues Gmo-Mir-196-P1b  Gmo-Mir-196-P4a 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Hsa-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1730: 83617-83675 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUAAAGCUGGAUCGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUCUGUCUUCUUACUCUGCAACACGAAACUGUCUUAAUUGCCUCAGUUACAAACAUCGAGUCCUCGG
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Structure
        10            20        30        40        50         
ACUUAAAGCUGGAUCGA----|  UCGA UG   U  GU      A      U   AUCUGU 
                     CUG    G  GUU AG  AGUUUC UGUUGU GGG      \
                     GAC    C  UAA UC  UCAAAG ACAACG CUC      C
GGCUCCUGAGCUACAAACAUU^  UC-- GU   U  UG      C      U   AUUCUU 
       110       100          90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-196-P1a_5p

mirBase accessionMIMAT0044146
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Gmo-Mir-196-P1a_3p*

mirBase accessionNone
Sequence
37- CUGCAACACGAAACUGUCUUAA -59
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