MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-196-P1

Family name MIR-196 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-196-2
Paralogues Gga-Mir-196-P3  Gga-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gallus_gallus.GRCg6a)		 2: 32649895-32649953 [-] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
UUAUUAGCGCCUGAGAACUGCUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGGCUCCACCUUUCUCUCUACAGCACGAAACUGCCUUAAUUACUUCAGUUGAUAUCAUCACCAGGUAUG
Get precursor sequence
Structure
        10            20        30        40         50        
UUAUUAGCGCCUGAGAA----|  CUCU      U          A      U-   GCUCC 
                     CUG    GUGGUU AGGUAGUUUC UGUUGU  GGG     A
                     GAC    CAUUAA UCCGUCAAAG ACGACA  UCU     C
GUAUGGACCACUACUAUAGUU^  UU--      U          C      UC   CUUUC 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-196-P1_5p
mirBase accessionMIMAT0001121
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Proposed targets TargetScanVert: gga-miR-196-5p
miRDB: MIMAT0001121
Star sequence

Gga-Mir-196-P1_3p*
mirBase accessionMIMAT0026504
Sequence 
37- CUACAGCACGAAACUGCCUUAA -59
Get sequence
Proposed targets TargetScanVert: gga-miR-196-2-3p
miRDB: MIMAT0026504