Mir-196-P1b

MirGeneDB ID

Tni-Mir-196-P1b

Family name

MIR-196 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-196-P1a Tni-Mir-196-P3a Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Xtr-Mir-196-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

8: 6797449-6797506 [+] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

UUGAAUAGGAGAGUGAGCUGUUGUGUGGUUUAGGUAGUCUCAUGUUGUUGGGUUCUAAUAUUUCUCCCACAACAGGAAACUGCCUUGAUUACCUCAGUAAAAAUCAUCGCAACAUGAA

Get precursor sequence

Structure

        10            20        30        40        50         
UUGAAUAGGAGAGUGAG----|  UUGU      U       C  A      U   UUCUAA 
                     CUG    GUGGUU AGGUAGU UC UGUUGU GGG      \
                     GAC    CAUUAG UCCGUCA AG ACAACA CCC      U
AAGUACAACGCUACUAAAAAU^  UC--      U       A  G      -   UCUUUA 
      110       100          90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-196-P1b_5p

mirBase accession

None

Sequence

0- UAGGUAGUCUCAUGUUGUUGGGU -23

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Star sequence

Tni-Mir-196-P1b_3p*

mirBase accession

None

Sequence

36- CCACAACAGGAAACUGCCUUGA -58

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