Mir-196-P1

MirGeneDB ID

Pab-Mir-196-P1

Family name

MIR-196 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-196-P3 Pab-Mir-196-P4

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054685.2: 57992166-57992223 [+] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CGCGGGCAGCACCAGAACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCACCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUGAAAUCGUCUCCAGGUACC

Get precursor sequence

Structure

        10            20        30        40        50        
CGCGGGCAGCACCAGAA----|   UC      UU       U  C           UCCA 
                     CUGG  GGUGAU  AGGUAGU UC UGUUGUUGGGA    C
                     GACU  UCAUUA  UCCGUCA AG ACGACAGCUCU    C
CCAUGGACCUCUGCUAAAGUU^   --      CU       C  C           CUUU 
      110       100          90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-196-P1_5p (predicted)

mirBase accession

None

Sequence

0- UAGGUAGUUUCCUGUUGUUGGGA -23

Get sequence

Star sequence

Pab-Mir-196-P1_3p* (predicted)

mirBase accession

None

Sequence

35- UCGACAGCACGACACUGCCUUCA -58

Get sequence