MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-196-P1e

Family name MIR-196 (all species)
Seed AGGUAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-196-P1f  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Hsa-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Xtr-Mir-196-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Olfactores
Genome context
(GCF_001663975.1_XLA_v2)
NC_030734.1: 39652903-39652962 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUGUUAGAACAGAGCCGCUGUGUGGUUUAGGUAGUUUUAUGUUGUUGGGCAUUUCUCCUUUCUCUCUACAACACGAAACUGCCUUAAUUACAUCAGUGGGAAUCAUCACCCAGGUAG
Get precursor sequence
Structure
        10         20         30        40         50         
CAAGUGUUAGAACAGAG-      -       U         UA      U-|  CAUUUC 
                  CCGCUG UGUGGUU AGGUAGUUU  UGUUGU  GGG      \
                  GGUGAC ACAUUAA UCCGUCAAA  ACAACA  UCU      U
GAUGGACCCACUACUAAG      U       U         GC      UC^  CUUUCC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-196-P1e_5p

mirBase accessionNone
Sequence
0- UAGGUAGUUUUAUGUUGUUGGG -22
Get sequence
Star sequence

Xla-Mir-196-P1e_3p*

mirBase accessionNone
Sequence
38- CUACAACACGAAACUGCCUUAA -60
Get sequence