MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-196-P1

Family name MIR-196 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-196b
Paralogues Eca-Mir-196-P3  Eca-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009151.1: 58381210-58381267 [-] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
CGCGGGCAGCAUCAGAACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCAGCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUGAAAUCGUCUCCAGGUACC
Get precursor sequence
Structure
        10            20        30        40        50        
CGCGGGCAGCAUCAGAA----|   UC      UU       U  C           UCCA 
                     CUGG  GGUGAU  AGGUAGU UC UGUUGUUGGGA    G
                     GACU  UCAUUA  UCCGUCA AG ACGACAGCUCU    C
CCAUGGACCUCUGCUAAAGUU^   --      CU       C  C           CUUU 
      110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-196-P1_5p
mirBase accessionMIMAT0012939
Sequence 
0- UAGGUAGUUUCCUGUUGUUGGGA -23
Get sequence
Star sequence

Eca-Mir-196-P1_3p*
mirBase accessionNone
Sequence 
35- UCGACAGCACGACACUGCCUUCA -58
Get sequence