MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-196-P1b

Family name MIR-196 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-196d
Paralogues Dre-Mir-196-P1a  Dre-Mir-196-P3a  Dre-Mir-196-P4a  Dre-Mir-196-P4b 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1b  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)		 chr16: 20913420-20913478 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
CCAAGAAACAAAGACAACUGCUAAGUGAUUUAGGUAGUUUUAUGUUGUUGGGCUCUAUUUUAUAUCCCCGCAACACGAAACUGUCUUAAUUGCCUCGCAGUGAGAUUCAGCACAACAAG
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Structure
        10          20        30        40        50         
CCAAGAAACAAAGACAA--|   UAA UG   U  GU     UA      U   CUCUAU 
                   CUGC   G  AUU AG  AGUUU  UGUUGU GGG      \
                   GACG   C  UAA UC  UCAAA  ACAACG CCC      U
GAACAACACGACUUAGAGU^   CUC GU   U  UG     GC      C   UAUAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-196-P1b_5p
mirBase accessionMIMAT0011313
Sequence 
0- UAGGUAGUUUUAUGUUGUUGGG -22
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Proposed targets TargetScanFish: dre-miR-196d
Star sequence

Dre-Mir-196-P1b_3p*
mirBase accessionNone
Sequence 
37- CCGCAACACGAAACUGUCUUAA -59
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