MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-196-P4a

Family name MIR-196 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-196a-1
Paralogues Dre-Mir-196-P1a  Dre-Mir-196-P1b  Dre-Mir-196-P3a  Dre-Mir-196-P4b 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xtr-Mir-196-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)		 chr23: 36088111-36088169 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-196-P4a)		 Mir-196-P4a chr23: 36088111-36088169 [+] UCSC Ensembl
Mir-10-P1d1-v1 chr23: 36130016-36130078 [+] UCSC Ensembl
Mir-10-P1d1-v2 chr23: 36130017-36130077 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
AACGCCGUUACGCGCGGCUGGUGCGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGGCUUCCUGGCUCGACAACAAGAAACUGCCUUGAUUACGUCAGUUCGUCUUCAUCAAGGGCGAC
Get precursor sequence
Structure
        10            20        30        40        50         
AACGCCGUUACGCGCGG----|  GU        U          A          AUUGGC 
                     CUG  GCGUGGUU AGGUAGUUUC UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAAG ACAACAGCUC      U
CAGCGGGAACUACUUCUGCUU^  --        U          A          GGUCCU 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-196-P4a_5p
mirBase accessionMIMAT0001276
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGGA -23
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Proposed targets TargetScanFish: dre-miR-196a
Star sequence

Dre-Mir-196-P4a_3p*
mirBase accessionNone
Sequence 
36- UCGACAACAAGAAACUGCCUUGA -59
Get sequence