Mir-196-P4b

MirGeneDB ID

Dre-Mir-196-P4b

Family name

MIR-196 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-196c

Paralogues

Dre-Mir-196-P1a Dre-Mir-196-P1b Dre-Mir-196-P3a Dre-Mir-196-P4a

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Xtr-Mir-196-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr11: 2190643-2190701 [+] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

GUGGAUAGCCCGUCCAGCUGAUGCGUGGUUUAGGUAGUUUGAUGUUGUUGGGGUUGACUUCCUGGCUCGACAACAAGAAACUGCCUUGAUUACGUCAGUUUGCCUUCAUCAAGGCCGUU

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Structure

        10            20        30        40        50         
GUGGAUAGCCCGUCCAG----|  AU        U         GA          GUUGAC 
                     CUG  GCGUGGUU AGGUAGUUU  UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAA  ACAACAGCUC      U
UUGCCGGAACUACUUCCGUUU^  --        U         GA          GGUCCU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-196-P4b_5p

mirBase accession

MIMAT0011298

Sequence

0- UAGGUAGUUUGAUGUUGUUGGG -22

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Proposed targets

TargetScanFish: dre-miR-196c

Star sequence

Dre-Mir-196-P4b_3p*

mirBase accession

None

Sequence

37- CGACAACAAGAAACUGCCUUGA -59

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