MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-196-P4

Family name MIR-196 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-196-P1  Cmi-Mir-196-P3 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4d-v1  Xtr-Mir-196-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636119.1: 230953-231010 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
GCGCCUGUUUUGUCCAACUGAUGUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUCGGGUUUAAACUCGACAACAAGAAACUGCCUUAAUUACGUCAGUUCGUUUUCAUCAAGGGCAAG
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Structure
        10            20        30        40        50        
GCGCCUGUUUUGUCCAA----|       UG   U          A          AUCGG 
                     CUGAUGUG  GUU AGGUAGUUUC UGUUGUUGGG     G
                     GACUGCAU  UAA UCCGUCAAAG ACAACAGCUC     U
GAACGGGAACUACUUUUGCUU^       --   U          A          AAAUU 
      110       100        90          80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-196-P4_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Cmi-Mir-196-P4_3p*
mirBase accessionNone
Sequence 
36- CGACAACAAGAAACUGCCUUAA -58
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