Mir-196-P4

MirGeneDB ID

Bta-Mir-196-P4

Family name

MIR-196 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-196a-2

Paralogues

Bta-Mir-196-P1 Bta-Mir-196-P3

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4d-v1 Xtr-Mir-196-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037332.1: 26040804-26040862 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-196-P4)

Mir-615 NC_037332.1: 25998839-25998902 [-] UCSC Ensembl
Mir-196-P4 NC_037332.1: 26040804-26040862 [-] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CCGCCCUGCUCGCUCAGCUGAUCUGUGGCUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUAUCGUCGAGGGCCCC

Get precursor sequence

Structure

        10            20        30        40        50         
CCGCCCUGCUCGCUCAG----|   UC                  A          AUUGAG 
                     CUGA  UGUGGCUUAGGUAGUUUC UGUUGUUGGG      \
                     GACU  ACAUUGAGUCCGUCAAAG ACAACGGCUC      U
CCCCGGGAGCUGCUAUUGGCU^   --                  A          AAGUUU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-196-P4_5p

mirBase accession

MIMAT0009255

Sequence

0- UAGGUAGUUUCAUGUUGUUGGGA -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-196a

Star sequence

Bta-Mir-196-P4_3p*

mirBase accession

None

Sequence

36- UCGGCAACAAGAAACUGCCUGAG -59

Get sequence