MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-196-P4a

Family name MIR-196 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-196b
Paralogues Gmo-Mir-196-P1a  Gmo-Mir-196-P1b 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xtr-Mir-196-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig48991: 1476-1534 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
GGACCCUCUGCGGGAAACUGAAACGUGGUUCAGGUAGUUUCAUGUUGUUGGGAUUCGCUUCCUGGCUCGGCAACAAGAAACUGCCUCGAUUACGUCAGUUCGUCUUCAUCAAGGGCACG
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Structure
        10            20        30        40        50         
GGACCCUCUGCGGGAAA----|   AA       C          A          AUUCGC 
                     CUGA  CGUGGUU AGGUAGUUUC UGUUGUUGGG      \
                     GACU  GCAUUAG UCCGUCAAAG ACAACGGCUC      U
GCACGGGAACUACUUCUGCUU^   --       C          A          GGUCCU 
       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-196-P4a_5p
mirBase accessionMIMAT0044059
Sequence 
0- CAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Gmo-Mir-196-P4a_3p* (predicted)
mirBase accessionNone
Sequence 
37- CGGCAACAAGAAACUGCCUCGA -59
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