MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-10-P1d1

Family name MIR-10 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-10b-2
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mal-Mir-10-P1d1-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)		 chr23: 36130017-36130077 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d1-v2)		 Mir-196-P4a chr23: 36088111-36088169 [+] UCSC Ensembl
Mir-10-P1d1-v1 chr23: 36130016-36130078 [+] UCSC Ensembl
Mir-10-P1d1-v2 chr23: 36130017-36130077 [+] UCSC Ensembl
Variant

Dre-Mir-10-P1d1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
AGAAGGGCCUGUCAGUAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUCCAAAACAUCAAAAUCGCAAAUACGUCUCUACAGGAAUACAUGGGCGACGUAAAAGCCACGAACGCCA
Get precursor sequence
Structure
        10          20        30        40        50        60
AGAAGGGCCUGUCAGUA--|        A   AC        AC  A       UCCAAAA 
                   GUCGUCUAU UGU  CCUGUAGA  CG AUUUGUG       C
                   CAGCGGGUA AUA  GGACAUCU  GC UAAACGC       A
ACCGCAAGCACCGAAAAUG^        C   A-        CU  A       UAAAACU 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P1d1-v2_5p
mirBase accessionMIMAT0001268
Sequence 
0- ACCCUGUAGAACCGAAUUUGUGU -23
Get sequence
Proposed targets TargetScanFish: dre-miR-10b
Star sequence

Dre-Mir-10-P1d1-v2_3p* (predicted)
mirBase accessionMIMAT0031934
Sequence 
39- GCAAAUACGUCUCUACAGGAAU -61
Get sequence
Variant

Dre-Mir-10-P1d1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
AAGAAGGGCCUGUCAGUAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUCCAAAACAUCAAAAUCGCAAAUACGUCUCUACAGGAAUACAUGGGCGACGUAAAAGCCACGAACGCCAA
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGAAGGGCCUGUCAGUA--|        A   AC        AC  A       UCCAAAA 
                    GUCGUCUAU UGU  CCUGUAGA  CG AUUUGUG       C
                    CAGCGGGUA AUA  GGACAUCU  GC UAAACGC       A
AACCGCAAGCACCGAAAAUG^        C   A-        CU  A       UAAAACU 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P1d1-v1_5p
mirBase accessionMIMAT0001268
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
Get sequence
Proposed targets TargetScanFish: dre-miR-10b
Star sequence

Dre-Mir-10-P1d1-v1_3p*
mirBase accessionMIMAT0031934
Sequence 
41- CAAAUACGUCUCUACAGGAAUA -63
Get sequence