MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-196-P1

Family name MIR-196 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-196-P3  Sha-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(DEVIL_add)		 GL861706.1: 2274380-2274438 [+] UCSC Ensembl
Seed AGGUAGU
Precursor
(pre-Mir +30nt flank)		 
UUGGGGGAGCAGCAGAACUGGUCUGUGAUUUAGGUAGUUUCCUGUUGUUGGGGCUCCACCUUUCUCUCGACAGCAUGAUACUGCCUUCAUUACUUCAGUUGAAUUCGUCACCAGGUAGA
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Structure
        10            20        30        40        50         
UUGGGGGAGCAGCAGAA----|   UCU     UU       U  C          GCUCCA 
                     CUGG   GUGAU  AGGUAGU UC UGUUGUUGGG      \
                     GACU   CAUUA  UCCGUCA AG ACGACAGCUC      C
AGAUGGACCACUGCUUAAGUU^   U--     CU       U  U          UCUUUC 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-196-P1_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCCUGUUGUUGGG -22
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Star sequence

Sha-Mir-196-P1_3p*
mirBase accessionNone
Sequence 
37- CGACAGCAUGAUACUGCCUUCA -59
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