Mir-196-P1

MirGeneDB ID

Xtr-Mir-196-P1

Family name

MIR-196 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-196b

Paralogues

Xtr-Mir-196-P4

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(xenTro9_add)

chr6: 32896546-32896604 [+] UCSC Ensembl

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CAAGUGUUAGAACAGAGCCGCUGUGUGGUUUAGGUAGUUUUAUGUUGUUGGGCAUUCACCUUUCUCUCUACAACAAGAAACUGCCUUAAUUACAUCAGUGGGAAUCAUCACCCAGGUAG

Get precursor sequence

Structure

        10         20         30        40         50        
CAAGUGUUAGAACAGAG-      -       U          A      U-|  CAUUC 
                  CCGCUG UGUGGUU AGGUAGUUUU UGUUGU  GGG     A
                  GGUGAC ACAUUAA UCCGUCAAAG ACAACA  UCU     C
GAUGGACCCACUACUAAG      U       U          A      UC^  CUUUC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-196-P1_5p

mirBase accession

MIMAT0003691

Sequence

0- UAGGUAGUUUUAUGUUGUUGGG -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-196b

Star sequence

Xtr-Mir-196-P1_3p* (predicted)

mirBase accession

None

Sequence

37- CUACAACAAGAAACUGCCUUAA -59

Get sequence