| MirGeneDB ID | Cli-Mir-1559 |
|---|
| Family name |
MIR-1559 (all species) |
|---|
| Species |
Rock pigeon (Columba livia) |
|---|
| MiRBase ID |
cli-mir-1559
|
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| Paralogues |
|
|---|
| Orthologues |
Gga-Mir-1559
Tgu-Mir-1559
|
|---|
| Node of Origin (locus) |
Neognathae
|
|---|
| Node of Origin (family) |
Neognathae
|
|---|
Genome context
(colLiv2) |
scaffold159: 524666-524725 [-]
|
|---|
| Seed |
UCGAUGC |
|---|
Precursor
(pre-Mir +30nt flank) |
UGAAUGUUGGACAUGAAGGUCUAGACUCCUUUCGAUGCUUGUAUGCUACUCCCAAGAAUGCUAACAGGAGUUCCAUGUAUGCAUCGAGCAGAGACUAUACCAUUUAAACUACAGCACGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAAUGUUGGACAUGAA--| C A CU U CU CAAGAA
GGU UAG CUC UUCGAUGC UGUAUG ACUCC U
CCA AUC GAG GAGCUACG AUGUAC UGAGG G
AGGCACGACAUCAAAUUUA^ U A AC U CU ACAAUC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Cli-Mir-1559_5p |
| mirBase accession | MIMAT0038685 |
|---|
| Sequence |
0- UUCGAUGCUUGUAUGCUACUCC -22
Get sequence
|
|---|
| Star sequence |
Cli-Mir-1559_3p* (predicted) |
| mirBase accession | MIMAT0038686 |
|---|
| Sequence |
38- AGUUCCAUGUAUGCAUCGAGCA -60
Get sequence
|
|---|
