MirGeneDB 3.0

35 microRNA genes with node of origin Neognathae

						Sort by genome coordinates								Motifs
MirGeneDB ID ▲	MiRBase ID	Family	Seed	5p accession	3p accession	Chromosome	Start	End	Strand	Node of origin (locus)	Node of origin (family)	Iso­miR	3' NTU	UG	UGUG	CNNC
Cli-Mir-458-as	None	MIR-458	UAGCUCU	None	None	scaffold636	126030	126087	-	Neognathae	Osteichthyes		No			1
Gga-Mir-458-as	gga-mir-458b	MIR-458	UAGCUCU	MIMAT0025830	MIMAT0025831	13	8954786	8954843	+	Neognathae	Osteichthyes		No			1
Cli-Mir-1451	cli-mir-1451	MIR-1451	CGCACAG	MIMAT0038678	MIMAT0038679	scaffold99	1351156	1351214	+	Neognathae	Neognathae		No			1
Gga-Mir-1451	gga-mir-1451	MIR-1451	CGCACAG	MIMAT0007324	MIMAT0007325	3	75994583	75994641	+	Neognathae	Neognathae		No			1
Tgu-Mir-1451	tgu-mir-1451	MIR-1451	CGCACAG	MIMAT0014451	MIMAT0026958	3	36306128	36306186	-	Neognathae	Neognathae		No			1
Cli-Mir-1467	cli-mir-1467	MIR-1467	UCACACC	MIMAT0038680	MIMAT0038681	scaffold216	4187745	4187809	-	Neognathae	Neognathae		No			1
Gga-Mir-1467	gga-mir-1467-1	MIR-1467	CACACCA	MIMAT0007345	MIMAT0007346	2	135915053	135915117	-	Neognathae	Neognathae		No			1
Tgu-Mir-1467	tgu-mir-1467-1	MIR-1467	UCACACC	MIMAT0025399	MIMAT0027342	2	137325683	137325747	-	Neognathae	Neognathae		No			1
Cli-Mir-1552	cli-mir-1552	MIR-1552	UAGUGCG	MIMAT0038683	MIMAT0038684	scaffold160	1494072	1494129	-	Neognathae	Neognathae		No
Gga-Mir-1552	gga-mir-1552	MIR-1552	UAGUGCG	MIMAT0007407	MIMAT0007408	1	134912431	134912488	+	Neognathae	Neognathae		No
Tgu-Mir-1552	None	MIR-1552	GCUAGCU	None	None	Tgu-Mir-1552_pre_1:30042988-30043131	44	101	-	Neognathae	Neognathae		No
Cli-Mir-1559	cli-mir-1559	MIR-1559	UCGAUGC	MIMAT0038685	MIMAT0038686	scaffold159	524666	524725	-	Neognathae	Neognathae		Unknown
Gga-Mir-1559	gga-mir-1559	MIR-1559	UCGAUGC	MIMAT0007416	MIMAT0026775	7	1375491	1375550	-	Neognathae	Neognathae		No			1
Tgu-Mir-1559	tgu-mir-1559	MIR-1559	UCGAUGC	None	MIMAT0014526	7	26224204	26224263	-	Neognathae	Neognathae		Unknown			1
Cli-Mir-1677-P5	cli-mir-1803-1	MIR-1677	UUGACUU	MIMAT0038703	MIMAT0038704	scaffold173	2790627	2790680	+	Neognathae	Diapsida		No
Gga-Mir-1677-P5	gga-mir-1803	MIR-1677	UUGACUU	None	MIMAT0007720	2	92556457	92556510	+	Neognathae	Diapsida		No
Tgu-Mir-1677-P5	tgu-mir-1803	MIR-1677	UUGACUU	MIMAT0026965	MIMAT0014472	2	94474915	94474969	+	Neognathae	Diapsida		No
Cli-Mir-1677-P6	None	MIR-1677	UGACUUA	None	None	scaffold231	75600	75657	+	Neognathae	Diapsida		No
Gga-Mir-1677-P6	None	MIR-1677	UGACUUA	None	None	2	83618413	83618470	+	Neognathae	Diapsida		No
Tgu-Mir-1677-P6	None	MIR-1677	UGACUUA	None	None	2	85363381	85363438	+	Neognathae	Diapsida		No
Cli-Mir-1729	cli-mir-1729	MIR-1729	UCCCUUA	MIMAT0038695	MIMAT0038696	scaffold20	27908	27969	+	Neognathae	Neognathae		No
Gga-Mir-1729	gga-mir-1729	MIR-1729	UCCCUUA	MIMAT0007629	MIMAT0007630	15	1058322	1058384	+	Neognathae	Neognathae		No
Tgu-Mir-1729	tgu-mir-1729	MIR-1729	UCCCUUA	MIMAT0014467	MIMAT0026963	15	6583448	6583510	+	Neognathae	Neognathae		No
Cli-Mir-1781	cli-mir-1781	MIR-1781	UUAAAUC	None	MIMAT0038697	scaffold146	3197333	3197391	+	Neognathae	Neognathae		No
Gga-Mir-1781	gga-mir-1781	MIR-1781	UUAAAUC	MIMAT0007692	MIMAT0007693	14	3720530	3720588	-	Neognathae	Neognathae		No
Tgu-Mir-1781	tgu-mir-1781	MIR-1781	UUUAAAU	None	MIMAT0025406	14	3993241	3993300	-	Neognathae	Neognathae		No
Cli-Mir-2131	cli-mir-2131	MIR-2131	UGCAGAA	MIMAT0038707	MIMAT0038708	scaffold476	26740	26804	-	Neognathae	Neognathae		No
Gga-Mir-2131	gga-mir-2131	MIR-2131	UGCAGAA	MIMAT0011207	MIMAT0026920	Z	70948215	70948279	-	Neognathae	Neognathae		No
Tgu-Mir-2131	tgu-mir-2131	MIR-2131	UGCAGAA	MIMAT0025410	None	Z	39830270	39830334	-	Neognathae	Neognathae		Unknown
Cli-Mir-2954	cli-mir-2954	MIR-2954	AUCCCCA	MIMAT0038711	MIMAT0038712	scaffold476	14816	14876	+	Neognathae	Neognathae		Yes	1		1
Gga-Mir-2954	gga-mir-2954	MIR-2954	AUCCCCA	None	MIMAT0014448	Z	70937428	70937488	+	Neognathae	Neognathae		Yes	1		1
Tgu-Mir-2954	tgu-mir-2954	MIR-2954	AUCCCCA	MIMAT0014623	MIMAT0014474	Z	39812452	39812511	+	Neognathae	Neognathae		Yes			1
Cli-Mir-2984	cli-mir-2984	MIR-2984	GCCUGCU	MIMAT0038715	None	scaffold167	918738	918804	+	Neognathae	Neognathae		Yes	1
Gga-Mir-2984	gga-mir-2984	MIR-2984	GCCUGCU	MIMAT0049894	MIMAT0049895	1	145954986	145955052	-	Neognathae	Neognathae		Yes			1
Tgu-Mir-2984	tgu-mir-2984	MIR-2984	GCCUGCU	MIMAT0014494	MIMAT0026970	1	75112556	75112622	+	Neognathae	Neognathae		No	1

(red - mature/co-mature, blue - star)

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