MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1677-P5

Family name MIR-1677 (all species)
Seed UUGACUU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1803
Paralogues Tgu-Mir-1677-P1  Tgu-Mir-1677-P2  Tgu-Mir-1677-P4  Tgu-Mir-1677-P6 
Orthologues Ami-Mir-1677-o5  Cli-Mir-1677-P5  Gga-Mir-1677-P5 
Node of Origin (locus) Neognathae
Node of Origin (family) Diapsida
Genome context
(TaeGut1_add)
2: 94474915-94474969 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGAAGAAAAUGGACUUAGGGCAUGAUCCAGAGCCCAUUGUAGUCAAUGGGAGACUUUUUCCAUUGACUUCAUCGGGGUUUGGAUCAGGCCUUUACUACCUAAAAUGAAUAAAC
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Structure
        10           20        30        40        50      
AAUGAAGAAAAUGGACUU---|    A         G   AU  U         GAGA 
                     AGGGC UGAUCCAGA CCC  UG AGUCAAUGG    C
                     UUCCG ACUAGGUUU GGG  AC UCAGUUACC    U
CAAAUAAGUAAAAUCCAUCAU^    G         G   CU  U         UUUU 
   110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-1677-P5_5p*

mirBase accessionMIMAT0026965
Sequence
0- AGAGCCCAUUGUAGUCAAUGG -21
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Mature sequence

Tgu-Mir-1677-P5_3p

mirBase accessionMIMAT0014472
Sequence
33- AUUGACUUCAUCGGGGUUUGGA -55
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