MirGeneDB ID | Tgu-Mir-1677-P5 |
Family name |
MIR-1677 (all species) |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-1803
|
Paralogues |
Tgu-Mir-1677-P1
Tgu-Mir-1677-P2
Tgu-Mir-1677-P4
Tgu-Mir-1677-P6
|
Orthologues |
Ami-Mir-1677-o5
Cli-Mir-1677-P5
Gga-Mir-1677-P5
|
Node of Origin (locus) |
Neognathae
|
Node of Origin (family) |
Diapsida
|
Genome context (TaeGut1_add) |
2: 94474915-94474969 [+]
UCSC
Ensembl
|
Seed |
UUGACUU |
Precursor (pre-Mir +30nt flank) |
AAUGAAGAAAAUGGACUUAGGGCAUGAUCCAGAGCCCAUUGUAGUCAAUGGGAGACUUUUUCCAUUGACUUCAUCGGGGUUUGGAUCAGGCCUUUACUACCUAAAAUGAAUAAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGAAGAAAAUGGACUU---| A G AU U GAGA
AGGGC UGAUCCAGA CCC UG AGUCAAUGG C
UUCCG ACUAGGUUU GGG AC UCAGUUACC U
CAAAUAAGUAAAAUCCAUCAU^ G G CU U UUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tgu-Mir-1677-P5_5p* |
mirBase accession | MIMAT0026965 |
Sequence |
0- AGAGCCCAUUGUAGUCAAUGG -21
Get sequence
|
Mature sequence |
Tgu-Mir-1677-P5_3p |
mirBase accession | MIMAT0014472 |
Sequence |
33- AUUGACUUCAUCGGGGUUUGGA -55
Get sequence
|