MirGeneDB ID | Tgu-Mir-1677-P4 |
Family name |
MIR-1677 (all species) |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-1784
|
Paralogues |
Tgu-Mir-1677-P1
Tgu-Mir-1677-P2
Tgu-Mir-1677-P5
Tgu-Mir-1677-P6
|
Orthologues |
Ami-Mir-1677-o4
Cli-Mir-1677-P4
Cpi-Mir-1677-P4
Gga-Mir-1677-P4
|
Node of Origin (locus) |
Archelosauria
|
Node of Origin (family) |
Diapsida
|
Genome context (TaeGut1_add) |
3: 82428447-82428504 [+]
UCSC
Ensembl
|
Seed |
GACUUAA |
Precursor (pre-Mir +30nt flank) |
ACUACUGUGCACUGAUUUCUUGGGGCCCAAUUCUGCUCUUAUUGAAAUCAGUGAGAGUCCUGCCAUUGACUUAAAUGGGAGCAGAAUUGGGACCUAAGAGGACAUAUCCAGUUCUGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUACUGUGCACUGAUU--| G G A GAGAG
UCUUGGG CCCAAUUCUGCUCUUAUU AA UCAGU U
AGAAUCC GGGUUAAGACGAGGGUAA UU AGUUA C
GGGUCUUGACCUAUACAGG^ A A C CCGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tgu-Mir-1677-P4_5p* |
mirBase accession | MIMAT0026960 |
Sequence |
0- UUCUGCUCUUAUUGAAAUCAGU -22
Get sequence
|
Mature sequence |
Tgu-Mir-1677-P4_3p |
mirBase accession | MIMAT0014457 |
Sequence |
36- UGACUUAAAUGGGAGCAGAAUU -58
Get sequence
|