MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1677-P6

Family name MIR-1677 (all species)
Seed UGACUUA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-1677-P1  Tgu-Mir-1677-P2  Tgu-Mir-1677-P4  Tgu-Mir-1677-P5 
Orthologues Cli-Mir-1677-P6  Cpi-Mir-1677-o6  Gga-Mir-1677-P6 
Node of Origin (locus) Neognathae
Node of Origin (family) Diapsida
Genome context
(TaeGut1_add)
2: 85363381-85363438 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCCUUGACUGUUAGCCUUUGGGAUGCAAACCUGCUUCCAUUUAAGUCAAUGUAAGUUUUAUCAUUGACUUAAUUGGAAGUGAGAUUGAGCCAUUGGGCAUGUGAGUGGCUUUAUAU
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Structure
        10           20        30         40        50        
AAGCCUUGACUGUUAGC---| UUG  AUG   AC  -       U           UAAG 
                    CU   GG   CAA  CU GCUUCCA UUAAGUCAAUG    U
                    GG   CC   GUU  GA UGAAGGU AAUUCAGUUAC    U
UAUAUUUCGGUGAGUGUACG^ UUA  GA-   A-  G       U           UAUU 
      110       100        90          80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-1677-P6_5p*

mirBase accessionNone
Sequence
0- ACCUGCUUCCAUUUAAGUCAAUG -23
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Mature sequence

Tgu-Mir-1677-P6_3p

mirBase accessionNone
Sequence
35- UUGACUUAAUUGGAAGUGAGAUU -58
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