Mir-1677-o6

MirGeneDB ID

Cpi-Mir-1677-o6

Family name

MIR-1677 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-1677a

Paralogues

Cpi-Mir-1677-o7 Cpi-Mir-1677-o8 Cpi-Mir-1677-P1a1 Cpi-Mir-1677-P1a2 Cpi-Mir-1677-P1b Cpi-Mir-1677-P2 Cpi-Mir-1677-P4

Orthologues

Cli-Mir-1677-P6 Gga-Mir-1677-P6 Tgu-Mir-1677-P6

Node of Origin (locus)

C. picta

Node of Origin (family)

Diapsida

Genome context
(chrPic1)

JH584713: 4439235-4439298 [-] UCSC Ensembl

Seed

UGACUUC

Precursor
(pre-Mir +30nt flank)

UGGACAGAUGAAGUCUGGAUGGGGCCUGAUUCAGAUCCCAUUGAAGUCAAUGAGAAUAUUUCAUUUGAGCUACUGACUUCAGUGGGCUUUGGUUCAGACCCACAGUCACUUGCUGAUGUAGUCA

Get precursor sequence

Structure

        10           20        30        40        50        60 
UGGACAGAUGAAGUCUGGA---|   GC    UU    U             AUGAGAAUAUU 
                      UGGG  CUGA  CAGA CCCAUUGAAGUCA           U
                      ACCC  GACU  GUUU GGGUGACUUCAGU           C
ACUGAUGUAGUCGUUCACUGAC^   A-    UG    C             CAUCGAGUUUA 
  120       110       100         90        80        70