MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-1677-P1a1

Family name MIR-1677 (all species)
Seed GACUUCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1677g-1
Paralogues Cpi-Mir-1677-o6  Cpi-Mir-1677-o7  Cpi-Mir-1677-o8  Cpi-Mir-1677-P1a2  Cpi-Mir-1677-P1b  Cpi-Mir-1677-P2  Cpi-Mir-1677-P4 
Orthologues Aca-Mir-1677-o1  Cli-Mir-1677-P1  Gga-Mir-1677-P1  Tgu-Mir-1677-P1 
Node of Origin (locus) C. picta
Node of Origin (family) Diapsida
Genome context
(chrPic1)
JH584677: 2397667-2397724 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1677-P1a1)
Mir-1677-P1a1 JH584677: 2397667-2397724 [+] UCSC Ensembl
Mir-1677-P1a2 JH584677: 2398652-2398709 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
NGUAACAUUUCACUUAGUCUGAAGGUGAAAUCCUGGCUCUGUUGAUGUCUAUAGAAGUUUUACCAUUGACUUCAGUAGAAUCAGGAUUUCUCCCUCAUGAGUGUUUACACUUCAGAAG
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Structure
        10          20        30        40        50        
NGUAACAUUUCACUUAG-  -|  A  U         GC        U   UAUAGAAG 
                  UC UGA GG GAAAUCCUG  UCUGUUGA GUC        U
                  AG ACU CC CUUUAGGAC  AGAUGACU CAG        U
GAAGACUUCACAUUUGUG  U^  C  U         UA        U   UUACCAUU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-1677-P1a1_5p* (predicted)

mirBase accessionNone
Sequence
0- UCCUGGCUCUGUUGAUGUCUAU -22
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Mature sequence

Cpi-Mir-1677-P1a1_3p

mirBase accessionMIMAT0037931
Sequence
36- UGACUUCAGUAGAAUCAGGAUU -58
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