MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-1677-o8

Family name MIR-1677 (all species)
Seed CUAAAUU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1677h
Paralogues Cpi-Mir-1677-o6  Cpi-Mir-1677-o7  Cpi-Mir-1677-P1a1  Cpi-Mir-1677-P1a2  Cpi-Mir-1677-P1b  Cpi-Mir-1677-P2  Cpi-Mir-1677-P4 
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) Diapsida
Genome context
(chrPic1)
JH584557: 925315-925376 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAACCUUGUUUGGUAUGGCUCUGGGGCUCAACUGCUCUCCCAAUUAAGUCAGUUGGACUUUUGAUUUUGACUAAAUUGGGAGAAGGGUUGAGUCCUCUGGUGACCUGUUUGUCAACUGGAC
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Structure
        10          20        30        40        50        60
AGAACCUUGUUUGGUAUG--|  CU           GC          A     GUUGGAC 
                    GCU  GGGGCUCAACU  UCUCCCAAUU AGUCA       U
                    UGG  UCCUGAGUUGG  AGAGGGUUAA UCAGU       U
CAGGUCAACUGUUUGUCCAG^  UC           GA          A     UUUAGUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-1677-o8_5p*

mirBase accessionMIMAT0037932
Sequence
0- AACUGCUCUCCCAAUUAAGUCA -22
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Mature sequence

Cpi-Mir-1677-o8_3p

mirBase accessionMIMAT0037933
Sequence
40- ACUAAAUUGGGAGAAGGGUUGA -62
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