MirGeneDB ID | Cpi-Mir-1677-o7 |
Family name |
MIR-1677 (all species) |
Seed |
CCAGAGC |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-1677b
|
Paralogues |
Cpi-Mir-1677-o6
Cpi-Mir-1677-o8
Cpi-Mir-1677-P1a1
Cpi-Mir-1677-P1a2
Cpi-Mir-1677-P1b
Cpi-Mir-1677-P2
Cpi-Mir-1677-P4
|
Orthologues |
Aca-Mir-1677-P7
Gja-Mir-1677-P7
Pbv-Mir-1677-P7
Spt-Mir-1677-P7
|
Node of Origin (locus) |
C. picta
|
Node of Origin (family) |
Diapsida
|
Genome context (chrPic1) |
JH584649: 363127-363184 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUGAGCUGCAAAAGCAACUAAGAGCCUGGUCCAGAGCCCAUUGAAGUCAGUGGGAGAUGUUCUAAUGACUCCAGAGGGCUUUGGAUCAGGCCCUAAGUUAAUCCACUGGAAUCUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUGAGCUGCAAAAGCA--| A A A A GUGGGAG
ACU AG GCCUGGUCCAGAGCCC UUG AGUCA A
UGA UC CGGACUAGGUUUCGGG GAC UCAGU U
GUCUCUAAGGUCACCUAAU^ A C A C AAUCUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-1677-o7_5p |
mirBase accession | MIMAT0037922 |
Sequence |
0- UCCAGAGCCCAUUGAAGUCAGU -22
Get sequence
|
Co-mature sequence |
Cpi-Mir-1677-o7_3p |
mirBase accession | MIMAT0037923 |
Sequence |
36- UGACUCCAGAGGGCUUUGGAUC -58
Get sequence
|