| MirGeneDB ID | Aca-Mir-1677-P7 |
|---|
| Family name |
MIR-1677 (all species) |
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| Seed |
CCAAAGC |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-1677b
|
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| Paralogues |
Aca-Mir-1677-o1
|
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| Orthologues |
Cpi-Mir-1677-o7
Gja-Mir-1677-P7
Pbv-Mir-1677-P7
Spt-Mir-1677-P7
|
|---|
| Node of Origin (locus) |
Lepidosauria
|
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| Node of Origin (family) |
Diapsida
|
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Genome context
(anoCar2) |
GL343197.1: 2025980-2026037 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUUUGGUUCAUUUCCUUGCUUAGGUCCUGAACCAAAGCCCCUCGAGGACAAUGUGAGUCUUUCUAUUGACUUCAGUGGGCUUAGGAUCAGGCCCUUAAUGCACAGCUGCUAUCAUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUUGGUUCAUUUCCUUGCUU-- U A A -| C A GUGAG
AGG CCUGA CC AAGCCC CU GAGG CAAU U
UCC GGACU GG UUCGGG GA CUUC GUUA C
ACGUACUAUCGUCGACACGUAAU C A A U^ - A UCUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Aca-Mir-1677-P7_5p |
| mirBase accession | MIMAT0021797 |
|---|
| Sequence |
0- ACCAAAGCCCCUCGAGGACAAU -22
Get sequence
|
|---|
| Co-mature sequence |
Aca-Mir-1677-P7_3p |
| mirBase accession | MIMAT0021798 |
|---|
| Sequence |
36- UGACUUCAGUGGGCUUAGGAUC -58
Get sequence
|
|---|
