MirGeneDB ID | Aca-Mir-1677-o1 |
Family name |
MIR-1677 (all species) |
Seed |
GACUUCA |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-1677a
|
Paralogues |
Aca-Mir-1677-P7
|
Orthologues |
Cli-Mir-1677-P1
Cpi-Mir-1677-P1a1
Cpi-Mir-1677-P1a2
Cpi-Mir-1677-P1b
Gga-Mir-1677-P1
Tgu-Mir-1677-P1
|
Node of Origin (locus) |
A. carolinensis
|
Node of Origin (family) |
Diapsida
|
Genome context (anoCar2) |
5: 15152952-15153008 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUACUUUUUAUUCUGGUAUAAAGUGUUAAUCCUCCCCUAUUGAAAUCAAUGGGAUGCCUGCCACUGACUUCAAUAGGAGUAGGAUGACACUAUAUGAUGUUAUAAAAUUUGUGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUACUUUUUAUUCUGG---| A A CC- A AUGGGAU
UAUA AGUGUUA UCCU CCUAUUGAA UCA G
GUAU UCACAGU AGGA GGAUAACUU AGU C
UUAGUGUUUAAAAUAUUGUA^ A - UGA C CACCGUC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Aca-Mir-1677-o1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCCUCCCCUAUUGAAAUCAAU -21
Get sequence
|
Mature sequence |
Aca-Mir-1677-o1_3p (predicted) |
mirBase accession | MIMAT0021796 |
Sequence |
35- UGACUUCAAUAGGAGUAGGAUG -57
Get sequence
|