| MirGeneDB ID | Gja-Mir-1677-P7 |
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| Family name |
MIR-1677 (all species) |
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| Seed |
CCAAAGC |
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| Species |
Schlegels Japanese gecko (Gekko japonicus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aca-Mir-1677-P7
Cpi-Mir-1677-o7
Pbv-Mir-1677-P7
Spt-Mir-1677-P7
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| Node of Origin (locus) |
Lepidosauria
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| Node of Origin (family) |
Diapsida
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Genome context
(GCF_001447785.1_Gekko_japonicus) |
NW_015166444.1: 722380-722437 [+]
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Precursor
(pre-Mir +30nt flank) |
CUUUGGUUCACUUCCUUGCUUAGGUCCUGAACCAAAGCCCCUCGAGGACAAUGUGAGUCUUUCUAUUGACUUCAGUGGGCUUAGGAUCAGGCCCUUAAUGCACAGCUACUCACACGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUUUGGUUCACUUCCUUGCUU-- U A A -| C A GUGAG
AGG CCUGA CC AAGCCC CU GAGG CAAU U
UCC GGACU GG UUCGGG GA CUUC GUUA C
ACGCACACUCAUCGACACGUAAU C A A U^ - A UCUUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Gja-Mir-1677-P7_5p |
| mirBase accession | None |
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| Sequence |
0- ACCAAAGCCCCUCGAGGACAAU -22
Get sequence
|
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| Co-mature sequence |
Gja-Mir-1677-P7_3p |
| mirBase accession | None |
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| Sequence |
36- UGACUUCAGUGGGCUUAGGAUC -58
Get sequence
|
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