| MirGeneDB ID | Cli-Mir-1677-P5 |
|---|
| Family name |
MIR-1677 (all species) |
|---|
| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-1803-1
|
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| Paralogues |
Cli-Mir-1677-P1
Cli-Mir-1677-P2
Cli-Mir-1677-P4
Cli-Mir-1677-P6
|
|---|
| Orthologues |
Ami-Mir-1677-o5
Gga-Mir-1677-P5
Tgu-Mir-1677-P5
|
|---|
| Node of Origin (locus) |
Neognathae
|
|---|
| Node of Origin (family) |
Diapsida
|
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Genome context
(colLiv2) |
scaffold173: 2790627-2790680 [+]
|
|---|
| Seed |
UUGACUU |
|---|
Precursor
(pre-Mir +30nt flank) |
UACGUUAAUGAAGAGCUUGGGGCAUGAACCAGAGCCCAUUGUAGUCAAUGGGAGUCUUUUUCCAUUGACUUCAGUGGGGUUUGAAUCAGGCCUUUACUUCCUAAAAUGAAUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UACGUUAAUGAAGAGCUU--| A AC G U GAGU
GGGGC UGA CAGA CCCAUUG AGUCAAUGG C
UUCCG ACU GUUU GGGUGAC UCAGUUACC U
AGAUAAGUAAAAUCCUUCAU^ G AA G U UUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Cli-Mir-1677-P5_5p* |
| mirBase accession | MIMAT0038703 |
|---|
| Sequence |
0- AGAGCCCAUUGUAGUCAAUGG -21
Get sequence
|
|---|
| Mature sequence |
Cli-Mir-1677-P5_3p |
| mirBase accession | MIMAT0038704 |
|---|
| Sequence |
33- AUUGACUUCAGUGGGGUUUGA -54
Get sequence
|
|---|
