| MirGeneDB ID | Cli-Mir-1677-P2 |
|---|
| Family name |
MIR-1677 (all species) |
|---|
| Seed |
CUUUAAU |
|---|
| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
|
|---|
| Paralogues |
Cli-Mir-1677-P1
Cli-Mir-1677-P4
Cli-Mir-1677-P5
Cli-Mir-1677-P6
|
|---|
| Orthologues |
Cpi-Mir-1677-P2
Gga-Mir-1677-P2
Tgu-Mir-1677-P2
|
|---|
| Node of Origin (locus) |
Archelosauria
|
|---|
| Node of Origin (family) |
Diapsida
|
|---|
Genome context
(colLiv2) |
scaffold309: 1394353-1394414 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCACUGCCUUCUGAUAUGCAAUACAGGCGUGAUCAAAAGCCUAUUUAAGUCAGUGGACUGAUUCCCAAUGACUUUAAUGGGCUUUGGAUUACACCCUAAUUGCACUGAUGUUCCCUUUACUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCACUGCCUUCUGAUAU--| ACA C A U GUGGACU
GCAAU GG GUGAUC AAAGCCUAUU AAGUCA G
CGUUA CC CAUUAG UUUCGGGUAA UUCAGU A
AUCAUUUCCCUUGUAGUCA^ AUC A G U AACCCUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
|---|
| Star sequence |
Cli-Mir-1677-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GAUCAAAAGCCUAUUUAAGUCA -22
Get sequence
|
|---|
| Mature sequence |
Cli-Mir-1677-P2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- ACUUUAAUGGGCUUUGGAUUAC -62
Get sequence
|
|---|
