| MirGeneDB ID | Tgu-Mir-1552 |
|---|
| Family name |
MIR-1552 (all species) |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cli-Mir-1552
Gga-Mir-1552
|
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| Node of Origin (locus) |
Neognathae
|
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| Node of Origin (family) |
Neognathae
|
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Genome context
(TaeGut1_add) |
Tgu-Mir-1552_pre_1:30042988-30043131: 44-101 [-]
UCSC
Ensembl
|
|---|
| Seed |
GCUAGCU |
|---|
Precursor
(pre-Mir +30nt flank) |
NNNNNNNNNNNGCUCGGCUACAUGGGGAAGUUACUGCGCAGCAAACUAGGGUGUGAAUUUACAGCACGCUAGCUGCUCUGCACUAACUCCCCCUGUGGAUGCUGAGUGUGCACUAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
NNNNNNNNNNNGCUCGG---| U A C C AA G UGAAU
CUACA GGGGA GUUA UGCG AGCA CUAG GUG \
GGUGU CCCCU CAAU ACGU UCGU GAUC CAC U
AGAAUCACGUGUGAGUCGUA^ C - C C C- G GACAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Tgu-Mir-1552_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UUACUGCGCAGCAAACUAGGGUG -23
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-1552_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CGCUAGCUGCUCUGCACUAACU -58
Get sequence
|
|---|
