| MirGeneDB ID | Cli-Mir-1729 |
|---|
| Family name |
MIR-1729 (all species) |
|---|
| Seed |
UCCCUUA |
|---|
| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-1729
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Gga-Mir-1729
Tgu-Mir-1729
|
|---|
| Node of Origin (locus) |
Neognathae
|
|---|
| Node of Origin (family) |
Neognathae
|
|---|
Genome context
(colLiv2) |
scaffold20: 27908-27969 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCCUCUUUGGUAGACAGGCCUGAUCCUGCAUCCCUUACUCACGUGAGCAGUCGUCUCUAUUUCACGGGACUACUCGGUGAGUAAGGAUCGCAGGACUGGGACCACUACCUGUAACUUUAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCCUCUUUGGUAGACA- - GA -| C G C GUCUCUA
GG CCU UCCUGC AUCC UUACUCAC UGAG AGUC \
CC GGG AGGACG UAGG AAUGAGUG GCUC UCAG U
AAAUUUCAAUGUCCAUCA A UC C^ - - A GGCACUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Cli-Mir-1729_5p |
| mirBase accession | MIMAT0038695 |
|---|
| Sequence |
0- AUCCCUUACUCACGUGAGCAGUC -23
Get sequence
|
|---|
| Co-mature sequence |
Cli-Mir-1729_3p |
| mirBase accession | MIMAT0038696 |
|---|
| Sequence |
40- CUACUCGGUGAGUAAGGAUCGC -62
Get sequence
|
|---|
