| MirGeneDB ID | Tgu-Mir-1781 |
|---|
| Family name |
MIR-1781 (all species) |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-1781
|
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| Paralogues |
|
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| Orthologues |
Cli-Mir-1781
Gga-Mir-1781
|
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| Node of Origin (locus) |
Neognathae
|
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| Node of Origin (family) |
Neognathae
|
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Genome context
(TaeGut1_add) |
14: 3993241-3993300 [-]
UCSC
Ensembl
|
|---|
| Seed |
UUUAAAU |
|---|
Precursor
(pre-Mir +30nt flank) |
UGGAAAAGAUGUGAGACAAGGAGCUUGUUGAGCAGCUGAGUGAUUUAAAAGCAAUCAAAUUCUUACAGCUUUAAAUCAUGCAGCUGUUGAACAAGUUCUUUCUUCAUUUGUCCCGAGUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAAAAGAUGUGAGAC--| G A A AAUCAAA
AAGGAGCUUGUU AGCAGCUG GUGAUUUAAA GC \
UUUCUUGAACAA UUGUCGAC UACUAAAUUU CG U
CCUGAGCCCUGUUUACUUC^ G G - ACAUUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Tgu-Mir-1781_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGCAGCUGAGUGAUUUAAAAGC -22
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-1781_3p |
| mirBase accession | MIMAT0025406 |
|---|
| Sequence |
38- CUUUAAAUCAUGCAGCUGUUGA -60
Get sequence
|
|---|
