MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-9627

Family name MIR-9627 (all species)
Seed AGCGUGG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-9627
Paralogues
Orthologues
Node of Origin (locus) C. livia
Node of Origin (family) C. livia
Genome context
(colLiv2)
scaffold240: 123101-123158 [+]
Precursor
(pre-Mir +30nt flank)
CGUCCCAGGUUUUGGGAAGGUUUUGUAGCUCAGGAGCAGUGCCAAGGCUGGGCUGGCUCUGCGCCUCAGCGUGGGCACUGCUCCAGACCUAAUAAACCCUGCUGGCUUCCCCUUGACU
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Structure
        10          20        30        40        50         
CGUCCCAGGUUUUGGGAA--     UG   C  A           AAG    -| CUGGC 
                    GGUUU  UAG UC GGAGCAGUGCC   GCUG GG     \
                    CCAAA  AUC AG CCUCGUCACGG   CGAC CC     U
UCAGUUCCCCUUCGGUCGUC     UA   C  A           GUG    U^ GCGUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-9627_5p*

mirBase accessionMIMAT0038745
Sequence
0- CAGGAGCAGUGCCAAGGCUGGG -22
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Mature sequence

Cli-Mir-9627_3p

mirBase accessionMIMAT0038746
Sequence
36- CAGCGUGGGCACUGCUCCAGAC -58
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