| MirGeneDB ID | Cli-Mir-9627 |
|---|
| Family name |
MIR-9627 (all species) |
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| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-9627
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. livia
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| Node of Origin (family) |
C. livia
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Genome context
(colLiv2) |
scaffold240: 123101-123158 [+]
|
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| Seed |
AGCGUGG |
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Precursor
(pre-Mir +30nt flank) |
CGUCCCAGGUUUUGGGAAGGUUUUGUAGCUCAGGAGCAGUGCCAAGGCUGGGCUGGCUCUGCGCCUCAGCGUGGGCACUGCUCCAGACCUAAUAAACCCUGCUGGCUUCCCCUUGACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGUCCCAGGUUUUGGGAA-- UG C A AAG -| CUGGC
GGUUU UAG UC GGAGCAGUGCC GCUG GG \
CCAAA AUC AG CCUCGUCACGG CGAC CC U
UCAGUUCCCCUUCGGUCGUC UA C A GUG U^ GCGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Cli-Mir-9627_5p* |
| mirBase accession | MIMAT0038745 |
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| Sequence |
0- CAGGAGCAGUGCCAAGGCUGGG -22
Get sequence
|
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| Mature sequence |
Cli-Mir-9627_3p |
| mirBase accession | MIMAT0038746 |
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| Sequence |
36- CAGCGUGGGCACUGCUCCAGAC -58
Get sequence
|
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