MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-218-2
Paralogues Cli-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold79: 13392693-13392756 [+]
Precursor
(pre-Mir +30nt flank)
UCUGACUCUGGCUGUUUGUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAAAUGGAACAUGGUUCUGUCAAGCACCAUGGAAGGCUGCAUACUCCCUGCCGCAUGGCAU
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Structure
        10          20        30        40        50        60 
UCUGACUCUGGCUGUUU--|  G        UUU         CU        GGUAGAACA 
                   GUG GGUUUUCC   GUGCUUGAU  AACCAUGU         A
                   UAC UCGGAAGG   CACGAACUG  UUGGUACA         U
UACGGUACGCCGUCCCUCA^  G        UAC         UC        AGGUAAACA 
  120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-218-P4_5p
mirBase accessionMIMAT0038602
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
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Star sequence

Cli-Mir-218-P4_3p*
mirBase accessionMIMAT0038603
Sequence 
43- AUGGUUCUGUCAAGCACCAUG -64
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