MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-218-P4a

Family name MIR-218 (all species)
Seed UGUGCUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xla-Mir-218-P4b 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xtr-Mir-218-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 26374994-26375057 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGGCUAUGACUCUUAAUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAUAUUGAACAUGGUUCUGUCAAGCACCAUGGAAGGCCACAUACUUUUCUGCCGCAUGGCA
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Structure
        10          20        30        40        50        60 
ACUGGCUAUGACUCUUA--|  G        UUU         CU        GGUAGAACA 
                   AUG GGUUUUCC   GUGCUUGAU  AACCAUGU         A
                   UAC CCGGAAGG   CACGAACUG  UUGGUACA         U
ACGGUACGCCGUCUUUUCA^  A        UAC         UC        AGUUAUACA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-218-P4a_5p
mirBase accessionNone
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
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Star sequence

Xla-Mir-218-P4a_3p* (predicted)
mirBase accessionNone
Sequence 
43- AUGGUUCUGUCAAGCACCAUG -64
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