MirGeneDB 2.1
MirGeneDB ID

Gga-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-218-2
Paralogues Gga-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Ete-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 13: 5314131-5314194 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGACUCUGGCUGUCCAUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAAAUUGAACAUGGUUCUGUCAAGCACCAUGGAAGGCUGCAUACUCCCUGCCGCAUGGCAU
Get precursor sequence
Structure
        10          20        30        40        50        60 
UCUGACUCUGGCUGUCC--|  G        UUU         CU        GGUAGAACA 
                   AUG GGUUUUCC   GUGCUUGAU  AACCAUGU         A
                   UAC UCGGAAGG   CACGAACUG  UUGGUACA         U
UACGGUACGCCGUCCCUCA^  G        UAC         UC        AGUUAAACA 
  120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-218-P4_5p
mirBase accessionMIMAT0001144
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
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Proposed targets TargetScanVert: gga-miR-218-5p
miRDB: MIMAT0001144
Star sequence

Gga-Mir-218-P4_3p*
mirBase accessionMIMAT0026518
Sequence 
43- AUGGUUCUGUCAAGCACCAUG -64
Get sequence
Proposed targets TargetScanVert: gga-miR-218-3p
miRDB: MIMAT0026518