MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-218-P4

Family name MIR-218 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-218-P2  Loc-Mir-218-P3 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG6: 38229124-38229188 [+] Ensembl
Seed UGUGCUU
Precursor
(pre-Mir +30nt flank)		 
GCCUCACUCUGCCUCUCGUGCAGCUGUCUCUUGUGCUUGAUCUAACCAUGUGCUGCCGCCUGCUCUCGCUCCACAUGGUUCCGUCAAGCACCAGGGACCGCUGGGCACUCGCACGCAGCAUGGCA
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Structure
        10          20        30        40        50        60  
GCCUCACUCUGCCUCUC--| G    U      U         CU         CUGCCGCCU 
                   GU CAGC GUCUCU GUGCUUGAU  AACCAUGUG         \
                   CG GUCG CAGGGA CACGAACUG  UUGGUACAC         G
ACGGUACGACGCACGCUCA^ G    C      C         CC         CUCGCUCUC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-218-P4_5p
mirBase accessionNone
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
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Star sequence

Loc-Mir-218-P4_3p*
mirBase accessionNone
Sequence 
43- CAUGGUUCCGUCAAGCACCAGG -65
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