MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-218-P4

Family name MIR-218 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-218-2
Paralogues Ami-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cja-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Eca-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Laf-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmr-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pab-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709751.1: 9433977-9434040 [+] UCSC
Seed UGUGCUU
Precursor
(pre-Mir +30nt flank)		 
ACUGACUCUGGCUGUUAAUGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUAGAACAAUACAAAUUGAACAUGGUUCUGUCAAGCACCAUGGAAGGCUGCAUACUUUCCUGCAGCAUGGCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACUGACUCUGGCUGUUA--|  G        UUU         CU        GGUAGAACA 
                   AUG GGUUUUCC   GUGCUUGAU  AACCAUGU         A
                   UAC UCGGAAGG   CACGAACUG  UUGGUACA         U
ACGGUACGACGUCCUUUCA^  G        UAC         UC        AGUUAAACA 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-218-P4_5p
mirBase accessionMIMAT0038247
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
Get sequence
Star sequence

Ami-Mir-218-P4_3p* (predicted)
mirBase accessionNone
Sequence 
43- AUGGUUCUGUCAAGCACCAUG -64
Get sequence