MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-218-P2

Family name MIR-218 (all species)
Seed UGUGCUU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-218-P3  Loc-Mir-218-P4 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Dre-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Gmo-Mir-218-P2  Hsa-Mir-218-P2  Lch-Mir-218-P2  Mal-Mir-218-P2  Mdo-Mir-218-P2  Mml-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pbv-Mir-218-P2  Pma-Mir-218-o2  Rno-Mir-218-P2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xtr-Mir-218-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG4: 9803039-9803102 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUAGUGGAGAAAAUUCAGCAGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUUGCGAGGUAUGUGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCUUGCAGUGUUCUACAGCAUGACA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CUAGUGGAGAAAAUUCA--|     UU    UUU         CU        GGUUGCGAG 
                   GCAGGG  UUCC   GUGCUUGAU  AACCAUGU         G
                   CGUUCU  AAGG   CACGAACUG  UUGGUACA         U
ACAGUACGACAUCUUGUGA^     GC    UAC         UC        AAAUGUGUA 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-218-P2_5p
mirBase accessionNone
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
Star sequence

Loc-Mir-218-P2_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAUGGUUCUGUCAAGCACCAUG -64
Get sequence